Bookmarks
-
Bioinformatic
- Bioc MList Search
- Eytan Domany - Home page
- yfleung's functional genomics home
- My functional genomics and data mining glossaries
- Roth Laboratory - Software
Soft
- PathBLAST
- GenMAPP - Supporting Documents
- BioRPMs
Annotation/Biblio
BioMed Central
- BioMed Central | Bioinformatics and Genomics Gateway |
- BioMed Central | Microarrays Gateway |
- BioMed Central | BMC Bioinformatics
- BioMed Central | BMC Genomics
- NCBI HomePage
- Gene Expression Omnibus (GEO) Main page
- KEGG PATHWAY Database
- European Bioinformatics Institute
- BioInfoBank Library, Home Page
- EBI Databases
- YSBN Collboration Action Website
- sgdi.org
GO
- http://david.niaid.nih.gov/david/tools.asp
- FatiGO : running, please wait...
- AmiGO! Your friend in the Gene Ontology.
- the Gene Ontology
- iHOP - Information Hyperlinked over Proteins
- iHOP - Information Hyperlinked over Proteins. iHOP provides
the network of genes and proteins as a natural way of accessing the
millions of abstracts in PubMed. By employing genes and proteins as
hyperlinks between sentences and abstracts, the information in PubMed
becomes bound together into one navigable resource. A Gene Network for
Navigating the Literature, Nature Genetics 36, 664 (2004).
- HubMed
Microarrays
- Welcome to Bioconductor — bioconductor.org
- My microarray software comparison
- Affymetrix
- ADAPT -- Affy ProbeSet mapping
- Custom CDF's
- GEPAS - Documentation
- Expressionist Seminar Schedule
- MIT OpenCourseWare | Biology | 7.90J Computational Functional Genomics, Spring 2005 | Lecture Notes
- This section lists the lecture topics covered in the course, along with the class notes for some lectures.
- Resources
- Programming in R
Pharmacogenomics
[Folder Name]
- PharmGKB: The Pharmacogenetics and Pharmacogenomics Knowledge Base
- Directions - 2003
- http://www.charite.de/ch/medgen/eumedis/medgen05/intro-pharmacogenomics.html
- Public Perception of Genomics/Genetic Testing: CGAT Survey Results
- Affymetrix - Fields of Study, Cancer - Refining Therapeutic Decisions and Predicting Drug Efficacy
- The genetics of disease and of a patient&3153;s inherent
metabolic processes influence therapeutic effectiveness, and the
- Resultados Google para Imagen http://www.brandchannel.com/images/Home/home2_img1_pharmacogenomics.jpg
- Innovative Epilepsy Therapies for the 21st Century - Part 1
- microarray analysis « Microarray Blog
- Affymetrix - Expression Research - Toxicogenomics - ToxFX Analysis Suite
- Expression Research - Toxicogenomics ToxFX Analysis Suite
- Affymetrix - Marijuana's Active Ingredient Kills Leukemia Cells
- Research Highlights, THC Kills Leukemia Cells.
- Affymetrix - Research Highlight, Identical Twins - Different Cancers
- The twin brothers were identical in every way, except for the
leukemia they developed?scientists found that they shared some cancer
- HapMap Homepage
- AMB Community
Info
- Biology Animation Library
- The New Genetics: Chapter 1: How Genes Work - National Institute of General Medical Sciences
- Affymetrix - GeneChip Essentials - Basics of Biology
- Affymetrix is dedicated to developing state-of-the-art
technology for acquiring, analyzing, and managing complex genetic
information for use in biomedical research. Affymetrix sells GeneChip®
- Google Búsqueda avanzada
Computational Resources
- Tutorials - Piki
- UCI Machine Learning Repository
- Some Competitive Learning Methods
- Some Competitive Learning Methods
- C Tutorial
- Oxford Physics Computing Programming Resources
- The Oxford University Physics Website.
- The Stony Brook Algorithm Repository
Clustering
- Spectral Clustering, ICML 2004 Tutorial by Chris Ding
- Data clustering - Wikipedia, the free encyclopedia
- Graphical Gaussian Models for Genome Data
- Links to GGM literature
- visualcomplexity.com | A visual exploration on mapping complex networks
- VisualComplexity.com is a unified resource space for anyone
interested in the visualization of complex networks. The project's main
goal is to leverage a critical understanding of different visualization
methods, across a series of disciplines, as diverse as Biology, Social
- Data Visualization: Modern Approaches
- Data presentation can be both beautiful, elegant and
descriptive. There is a variety of conventional ways to visualize data
GeneExpressionClustering
- Gmail - respuesta - algo107@gmail.com
- (gene expression data clustering) AND (PNAS[Jour]) - PubMed Results
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Growing functional modules from a seed protein via...[BMC Bioinformatics. 2007] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Exact and heuristic algorithms for weighted cluste...[Comput Syst Bioinformatics Conf. 2007] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Large scale clustering of protein sequences with F...[BMC Bioinformatics. 2007] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Clustering in complex directed networks. [Phys Rev E Stat Nonlin Soft Matter Phys. 2007] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- ASK-GraphView: A large scale graph visualization s...[IEEE Trans Vis Comput Graph. 2006 Sep-Oct] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Spectral embedding finds meaningful (relevant) str...[BMC Bioinformatics. 2006] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- A new algorithm for comparing and visualizing rela...[Bioinformatics. 2005] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Estimating genomic coexpression networks using fir...[Genome Biol. 2004] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- The reduced graph descriptor in virtual screening ...[J Chem Inf Comput Sci. 2004 Nov-Dec] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- PubMed Home
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Bioinformatics -- Sign In Page
- Metagene projection for cross-platform, cross-spec...[Proc Natl Acad Sci U S A. 2007] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Information-based clustering. [Proc Natl Acad Sci U S A. 2005] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Spatial patterns of gene expression in the olfacto...[Proc Natl Acad Sci U S A. 2004] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Metagenes and molecular pattern discovery using ma...[Proc Natl Acad Sci U S A. 2004] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- A panoramic view of gene expression in the human k...[Proc Natl Acad Sci U S A. 2003] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Protein pathway and complex clustering of correlat...[Proc Natl Acad Sci U S A. 2003] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Cluster analysis of gene expression dynamics. [Proc Natl Acad Sci U S A. 2002] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
- Analysis of DNA microarrays using algorithms that ...[Proc Natl Acad Sci U S A. 2002] - PubMed Result
- PubMed is a service of the U.S. National Library of Medicine
that includes over 16 million citations from MEDLINE and other life
science journals for biomedical articles back to the 1950s. PubMed
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- Graph Clustering by Flow Simulation; Stijn's thesis
Science
- Intuitor Insultingly Stupid Movie Physics
- Intuitor Insultingly Stupid Movie Physics: Reviews and rates Hollywood movies for bad physics content
- DNA structure
- EDICIONES IAMIQUE
- Ciencia para chicos
- JoVE: Journal of Visualized Experiments - Biological Experiments and Protocols on Video
- JoVE, Journal, Biology, Life Sciences, Video, Protocol, Protocols, Neuroscience, Stem-cell, Movie, Visualization, Experiments
- DNA Wrapping And Replication
- search for science videos with ScienceHack
- WorldWideScience
- WorldWideScience, Office of Scientific and Technical Information, U.S. Department of Energy
- VideoLectures - exchange ideas & share knowledge
- Free on-demand educational video lectures from world's leading
- eigenfactor.org - ranking and mapping scientific journals
Statistics
- The logrank test -- Bland and Altman 328 (7447): 1073 -- BMJ
- RSS Matters
- Free Statistical Software
- A large collection of links to interactive web pages that perform statistical calculations
- A Guide to Statistical Software
- quantpsy.org
- NIST/SEMATECH e-Handbook of Statistical Methods
- MMU - Research Design, Biol Sci:Analysis: factorial ANOVA
- Overview (simplified) of factorial designs for ANOVA. This is
part of the MSc unit in Research Design in the Department of Biological
- Russ Lenth's power and sample-size page
- http://www.kingsborough.edu/academicDepartments/math/faculty/rsturm/anova/Anova0126.html
- Rice Virtual Lab in Statistics
- Web based materials for teaching statistics. Includes
simulations, demonstrations, case studies, and an online statistics
Systems Biology
Modeling
- JWS Online Cellular Systems Modelling: Model Database
- ModelDB
- Applied Discrete Mathematics Group at VBI
- Biochemical Networks Modeling Group : HomePage
- Links a Stochastic Sim Methods
- Physics Simulations
- Modeling and Simulation Reaction Networks
- Home of the Virtual Cell Program, Department of Systems Biology, Harvard Medical School
- littleb.org - home of the little b modular modeling language
- http://www.caam.rice.edu/~caam210/reac/lec.html
- Animations - MAPK
- Systems Biology Software Project
- Simbios: NIH Center for Biomedical Computation at Stanford University
- Simbios: NIH Center for Biomedical Computation at Stanford University
- Ideker Lab - Research
- Systems Biology - BioChemWeb.org
- This page is an annotated index of major online resources dealing with systems biology, integrative biology, computational biology, bioinformatics, proteomics, theoretical biology and quantitative biology.
- Conferences - Dream Initiative
Yeast
- Model of the Yeast pheromone signal transduction pathway
- Pheromone signal transduction pathway
- Budding Yeast Cell Cycle Model
- Cell Cycle Regulated Yeast Genes
- Saccharomyces Genome Database
- Main Page - Yeast Pheromone Model
- Current Biology -- Breitkreutz et al.
Mecanica Estadistica
- http://www.imsc.res.in/~sitabhra/teaching/sm06/index.html
- Sketching the History of Statistical Mechanics and Thermodynamics
- Important names, dates and experiments in the history of
thermodynamics,statistical mechanics, probability, phlogiston, caloric,
- Sketching the History of Statistical Mechanics and Thermodynamics
Networks
- NWB Community Wiki : Home Page browse
Otros
- Ideas Nuevas - Martin Varsavsky | Spanish
- Gmane Search -- affyplm limma weight
- The Cell - Glossary
- Instructables - How to make cool DIY projects
- WordReference Forums
- An active forum about languages and cultures.
linux
- Panel Plugins [Xfce Goodies]
-
aver
- dUTPase AND human [organism] - Gene Results
- Entrez Gene provides a unified query environment for genes defined by sequence and/or in NCBI's Map Viewer.
- dUTPase AND human [organism] - Gene Results
- Entrez Gene provides a unified query environment for genes defined by sequence and/or in NCBI's Map Viewer.
- Entrez Gene: DUT dUTP pyrophosphatase [ Homo sapiens ]
- Entrez Gene provides a unified query environment for genes defined by sequence and/or in NCBI's Map Viewer.
- Map Viewer
- The Map Viewer provides special
browsing capabilities for a subset of organisms; view and search an
organism's complete genome, display chromosome maps, and zoom into
progressively greater levels of detail, down to the sequence data for a
region of interest.
- 9633 Info
- DNA Direct Talk » Genetic Discrimination
- Structural Equation Modelling for fMRI using Matlab
- Graph traversal - Wikipedia, the free encyclopedia