Bookmarks

Personal Toolbar Folder

Bioinformatic

Bioc MList Search
Eytan Domany - Home page
yfleung's functional genomics home
My functional genomics and data mining glossaries
Roth Laboratory - Software

Soft

PathBLAST
GenMAPP - Supporting Documents
BioRPMs

Annotation/Biblio

BioMed Central

BioMed Central | Bioinformatics and Genomics Gateway |
BioMed Central | Microarrays Gateway |
BioMed Central | BMC Bioinformatics
BioMed Central | BMC Genomics

NCBI HomePage
Gene Expression Omnibus (GEO) Main page
KEGG PATHWAY Database
European Bioinformatics Institute
BioInfoBank Library, Home Page
EBI Databases
YSBN Collboration Action Website
sgdi.org

GO

http://david.niaid.nih.gov/david/tools.asp
FatiGO : running, please wait...
AmiGO! Your friend in the Gene Ontology.
the Gene Ontology

iHOP - Information Hyperlinked over Proteins
iHOP - Information Hyperlinked over Proteins. iHOP provides the network of genes and proteins as a natural way of accessing the millions of abstracts in PubMed. By employing genes and proteins as hyperlinks between sentences and abstracts, the information in PubMed becomes bound together into one navigable resource. A Gene Network for Navigating the Literature, Nature Genetics 36, 664 (2004).
HubMed

Microarrays

Welcome to Bioconductor — bioconductor.org
My microarray software comparison
Affymetrix
ADAPT -- Affy ProbeSet mapping
Custom CDF's
GEPAS - Documentation
Expressionist Seminar Schedule

MIT OpenCourseWare | Biology | 7.90J Computational Functional Genomics, Spring 2005 | Lecture Notes
This section lists the lecture topics covered in the course, along with the class notes for some lectures.
Resources
Programming in R

Pharmacogenomics

[Folder Name]

PharmGKB: The Pharmacogenetics and Pharmacogenomics Knowledge Base
Directions - 2003
http://www.charite.de/ch/medgen/eumedis/medgen05/intro-pharmacogenomics.html
Public Perception of Genomics/Genetic Testing: CGAT Survey Results
Affymetrix - Fields of Study, Cancer - Refining Therapeutic Decisions and Predicting Drug Efficacy
The genetics of disease and of a patient&3153;s inherent metabolic processes influence therapeutic effectiveness, and the
Resultados Google para Imagen http://www.brandchannel.com/images/Home/home2_img1_pharmacogenomics.jpg
Innovative Epilepsy Therapies for the 21st Century - Part 1
microarray analysis « Microarray Blog
Affymetrix - Expression Research - Toxicogenomics - ToxFX Analysis Suite
Expression Research - Toxicogenomics ToxFX Analysis Suite
Affymetrix - Marijuana's Active Ingredient Kills Leukemia Cells
Research Highlights, THC Kills Leukemia Cells.
Affymetrix - Research Highlight, Identical Twins - Different Cancers
The twin brothers were identical in every way, except for the leukemia they developed?scientists found that they shared some cancer
HapMap Homepage
AMB Community

Info

Biology Animation Library
The New Genetics: Chapter 1: How Genes Work - National Institute of General Medical Sciences
Affymetrix - GeneChip Essentials - Basics of Biology
Affymetrix is dedicated to developing state-of-the-art technology for acquiring, analyzing, and managing complex genetic information for use in biomedical research. Affymetrix sells GeneChip®

Google Búsqueda avanzada

Computational Resources

Tutorials - Piki
UCI Machine Learning Repository
Some Competitive Learning Methods
Some Competitive Learning Methods
C Tutorial
Oxford Physics Computing Programming Resources
The Oxford University Physics Website.
The Stony Brook Algorithm Repository

Clustering

Spectral Clustering, ICML 2004 Tutorial by Chris Ding
Data clustering - Wikipedia, the free encyclopedia
Graphical Gaussian Models for Genome Data
Links to GGM literature
visualcomplexity.com | A visual exploration on mapping complex networks
VisualComplexity.com is a unified resource space for anyone interested in the visualization of complex networks. The project's main goal is to leverage a critical understanding of different visualization methods, across a series of disciplines, as diverse as Biology, Social
Data Visualization: Modern Approaches
Data presentation can be both beautiful, elegant and descriptive. There is a variety of conventional ways to visualize data

GeneExpressionClustering

Gmail - respuesta - algo107@gmail.com
(gene expression data clustering) AND (PNAS[Jour]) - PubMed Results
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Growing functional modules from a seed protein via...[BMC Bioinformatics. 2007] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Exact and heuristic algorithms for weighted cluste...[Comput Syst Bioinformatics Conf. 2007] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Large scale clustering of protein sequences with F...[BMC Bioinformatics. 2007] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Clustering in complex directed networks. [Phys Rev E Stat Nonlin Soft Matter Phys. 2007] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
ASK-GraphView: A large scale graph visualization s...[IEEE Trans Vis Comput Graph. 2006 Sep-Oct] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Spectral embedding finds meaningful (relevant) str...[BMC Bioinformatics. 2006] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
A new algorithm for comparing and visualizing rela...[Bioinformatics. 2005] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Estimating genomic coexpression networks using fir...[Genome Biol. 2004] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
The reduced graph descriptor in virtual screening ...[J Chem Inf Comput Sci. 2004 Nov-Dec] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
PubMed Home
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Bioinformatics -- Sign In Page
Metagene projection for cross-platform, cross-spec...[Proc Natl Acad Sci U S A. 2007] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Information-based clustering. [Proc Natl Acad Sci U S A. 2005] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Spatial patterns of gene expression in the olfacto...[Proc Natl Acad Sci U S A. 2004] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Metagenes and molecular pattern discovery using ma...[Proc Natl Acad Sci U S A. 2004] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
A panoramic view of gene expression in the human k...[Proc Natl Acad Sci U S A. 2003] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Protein pathway and complex clustering of correlat...[Proc Natl Acad Sci U S A. 2003] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Cluster analysis of gene expression dynamics. [Proc Natl Acad Sci U S A. 2002] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed
Analysis of DNA microarrays using algorithms that ...[Proc Natl Acad Sci U S A. 2002] - PubMed Result
PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed

Graph Clustering by Flow Simulation; Stijn's thesis

Science

Intuitor Insultingly Stupid Movie Physics
Intuitor Insultingly Stupid Movie Physics: Reviews and rates Hollywood movies for bad physics content
DNA structure
EDICIONES IAMIQUE
Ciencia para chicos
JoVE: Journal of Visualized Experiments - Biological Experiments and Protocols on Video
JoVE, Journal, Biology, Life Sciences, Video, Protocol, Protocols, Neuroscience, Stem-cell, Movie, Visualization, Experiments
DNA Wrapping And Replication
search for science videos with ScienceHack
WorldWideScience
WorldWideScience, Office of Scientific and Technical Information, U.S. Department of Energy
VideoLectures - exchange ideas & share knowledge
Free on-demand educational video lectures from world's leading
eigenfactor.org - ranking and mapping scientific journals

Statistics

The logrank test -- Bland and Altman 328 (7447): 1073 -- BMJ
RSS Matters
Free Statistical Software
A large collection of links to interactive web pages that perform statistical calculations
A Guide to Statistical Software
quantpsy.org
NIST/SEMATECH e-Handbook of Statistical Methods
MMU - Research Design, Biol Sci:Analysis: factorial ANOVA
Overview (simplified) of factorial designs for ANOVA. This is part of the MSc unit in Research Design in the Department of Biological
Russ Lenth's power and sample-size page
http://www.kingsborough.edu/academicDepartments/math/faculty/rsturm/anova/Anova0126.html
Rice Virtual Lab in Statistics
Web based materials for teaching statistics. Includes simulations, demonstrations, case studies, and an online statistics

Systems Biology

Modeling

JWS Online Cellular Systems Modelling: Model Database
ModelDB
Applied Discrete Mathematics Group at VBI
Biochemical Networks Modeling Group : HomePage
Links a Stochastic Sim Methods
Physics Simulations
Modeling and Simulation Reaction Networks
Home of the Virtual Cell Program, Department of Systems Biology, Harvard Medical School
littleb.org - home of the little b modular modeling language
http://www.caam.rice.edu/~caam210/reac/lec.html
Animations - MAPK
Systems Biology Software Project
Simbios: NIH Center for Biomedical Computation at Stanford University
Simbios: NIH Center for Biomedical Computation at Stanford University

Ideker Lab - Research
Systems Biology - BioChemWeb.org
This page is an annotated index of major online resources dealing with systems biology, integrative biology, computational biology, bioinformatics, proteomics, theoretical biology and quantitative biology.
Conferences - Dream Initiative

Yeast

Model of the Yeast pheromone signal transduction pathway
Pheromone signal transduction pathway
Budding Yeast Cell Cycle Model
Cell Cycle Regulated Yeast Genes
Saccharomyces Genome Database
Main Page - Yeast Pheromone Model
Current Biology -- Breitkreutz et al.


Mecanica Estadistica

http://www.imsc.res.in/~sitabhra/teaching/sm06/index.html
Sketching the History of Statistical Mechanics and Thermodynamics
Important names, dates and experiments in the history of thermodynamics,statistical mechanics, probability, phlogiston, caloric,
Sketching the History of Statistical Mechanics and Thermodynamics

Networks

NWB Community Wiki : Home Page browse

Otros

Ideas Nuevas - Martin Varsavsky | Spanish
Gmane Search -- affyplm limma weight
The Cell - Glossary
Instructables - How to make cool DIY projects
WordReference Forums
An active forum about languages and cultures.

linux

Panel Plugins [Xfce Goodies]

aver

dUTPase AND human [organism] - Gene Results
Entrez Gene provides a unified query environment for genes defined by sequence and/or in NCBI's Map Viewer.
dUTPase AND human [organism] - Gene Results
Entrez Gene provides a unified query environment for genes defined by sequence and/or in NCBI's Map Viewer.
Entrez Gene: DUT dUTP pyrophosphatase [ Homo sapiens ]
Entrez Gene provides a unified query environment for genes defined by sequence and/or in NCBI's Map Viewer.
Map Viewer
The Map Viewer provides special browsing capabilities for a subset of organisms; view and search an organism's complete genome, display chromosome maps, and zoom into progressively greater levels of detail, down to the sequence data for a region of interest.
9633 Info
DNA Direct Talk » Genetic Discrimination

Structural Equation Modelling for fMRI using Matlab
Graph traversal - Wikipedia, the free encyclopedia