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V. The Selkov model

The Selkov model gif represents an open monosubstrate and monoproduct reaction catalized by an allosteric enzyme which is inhibited by the substrate and activated by the product. The model describes the kinetics of the reactions involved in the appearance of a single frequency oscillation in the glycolytic pathway. The simple kinetic model developed by Selkov reads:

eqnarray762

where tex2html_wrap_inline2090 is supplied by an external source at the rate tex2html_wrap_inline2394 which is supposed to remain constant during the reaction. From the equations it is clear that tex2html_wrap_inline2090 is irreversibly converted into the product molecules tex2html_wrap_inline2092 . The product is then removed by an irreversible sink at the rate tex2html_wrap_inline2400 . The free enzyme E is inactive unless when it has tex2html_wrap_inline2404 product molecules bounded, forming the complex tex2html_wrap_inline2406 . Assuming that the sink of the product behaves as a first order reaction, and including in the description the transport of the substrate and product molecules by diffusion (the transport of the enzyme and its complexes can be neglected) the reaction-diffusion system can be written as:

      eqnarray796

where

eqnarray827

with tex2html_wrap_inline2408tex2html_wrap_inline2410tex2html_wrap_inline2412tex2html_wrap_inline2414tex2html_wrap_inline2416 , and tex2html_wrap_inline2418 . Adding Eqs. (61), (62) and (63), the constancy of the total amount of the enzyme becomes evident: tex2html_wrap_inline2420 . That allows us to reduce the dimensionality of the system by one.

According to Selkov's data, the concentration of E and its complexes is 3 to 4 orders of magnitude below those of ATP and ADP. So, we can rescale the tex2html_wrap_inline2432 concentrations by a small parameter (of the order of tex2html_wrap_inline1990 ), as done in gif. In order to discuss the validity of the approximation in different limits we will introduce a new parameter tex2html_wrap_inline2436 such that tex2html_wrap_inline2438 and tex2html_wrap_inline2440 and use the expansion tex2html_wrap_inline2442 to simplify the notation.

We proceed as described in Sec. V of the paper in order to get rid of tex2html_wrap_inline2444tex2html_wrap_inline2446 and tex2html_wrap_inline2448 in favor of tex2html_wrap_inline2450 and tex2html_wrap_inline2452 . The set of algebraic relations tex2html_wrap_inline2454 can be solved. Its solutions are given by

  eqnarray903

where we have defined the rescaled concentrations, tex2html_wrap_inline2456 and tex2html_wrap_inline2458 , as

  equation932

In this case, as we are dealing with more than one fast reaction, the equations for the first correction terms, tex2html_wrap_inline2460 , can be written together in matrix form. Their expression reads,

equation947

from which we get:

  eqnarray965

where tex2html_wrap_inline2464 .

Introducing the expansions tex2html_wrap_inline2442 , with tex2html_wrap_inline2468 and tex2html_wrap_inline2460 given by Eqs. (71) and (74), into Eqs. (59)-(60), and using the rescaled variables (72) we finally find:

   eqnarray1016

where we have defined

     eqnarray1056


next up previous
Next: The FIS reaction Up: Rescaling of diffusion coefficients Previous: The case of three
Silvina Ponce Dawson

Fri Aug 27 03:50:25 ART 1999